Goal:
Identify genes involved in Human Papillomavirus (HPV) infection.
Datasets:
Published dataset from the lab (Kines et al. 2016) of relative infectivity across NCI-60 panel of cancer cell lines
Expression data (Affy HG-U133 microarray) from the NCI-CellMiner webpage
Methods:
- Compare expression level differences in highly infected vs poorly infected cell line groups; create heatmap with probes reaching p < 0.01.